Heartburn and reflux in perimenopause (and why it is often low acid)

by Sarah McLachlan, The Perimenopause Naturopath | Perimenopause Hormones, Gut Health

In short

Reflux and heartburn get much more common in perimenopause, and the reason surprises most women: it is often not too much stomach acid. It is too little. As oestrogen falls, digestion slows, food sits and ferments, gas builds, and pressure pushes stomach contents up into the oesophagus. Which means the standard reflex of suppressing acid can sometimes make the underlying problem worse over time. The fix is usually about getting digestion working properly again, not shutting it down.

In this post:

  • Why reflux is not always high stomach acid
  • Why perimenopause brings it on, and how common it actually is
  • What happens when oestrogen falls, and why MHT can trigger it too
  • Where GLP-1 medications fit
  • Acid-suppressing medication: what to know about the long term
  • What actually helps, and the herbal and nutritional options that do not cost you nutrients
  • When reflux needs your GP, not a home remedy

Reflux does not always mean too much stomach acid

Let’s start here, because it changes everything that follows:

We used to assume reflux was always excess stomach acid. That assumption is why antacids became the automatic answer, and why so many people end up managing a symptom for years without anyone asking how or why it started.

But acid in the wrong place is not the same thing as too much acid.

Slowed motility, meaning food moving too slowly through the digestive tract, causes fermentation and gas build-up. That gas creates upward pressure, and pressure pushes stomach contents past the valve at the top of the stomach and into the oesophagus. You feel burning. But the total amount of acid may be perfectly normal, or even low.

In fact, women with hypochlorhydria, which means low stomach acid, very commonly experience reflux symptoms. It is one of the great counterintuitive facts of digestive health, and almost nobody is told about it.

And even when acid genuinely is excessive, that did not come from nowhere. Gut infections, inflammation and excess body fat can all drive overproduction. Which is why I am rarely satisfied with suppressing it and moving on.

The mechanism

What is actually happening
at the top of your stomach

The same anatomy, two different situations. Only one of them is about having too much acid.

When it's working

Oesophagus

Calm. Nothing travelling upward.

▼

The valve

Closed, and staying closed.

▼

Stomach

Enough acid to break food down properly.

▼

Onward

Food moves through in good time. No fermenting, no gas, no pressure.

Result: you eat, you digest, nothing to worry about.

The perimenopause picture

Oesophagus

Burning. Stomach contents have travelled up.

▲

The valve

Pushed open from below by pressure.

▲

Stomach

Often less acid, not more. Falling oestrogen thins the protective lining too.

▲

Onward

Digestion has slowed. Food sits, ferments, and gas builds until something has to give.

Result: burning, not from excess acid, but from being in the wrong place.

This is why suppressing acid can relieve the burning without touching what started it. The burning is real. The cause is upstream.

How common is reflux in perimenopause?

Much more common than most women realise, and much more common than it is talked about.

Research presented at the 2025 Annual Meeting of The Menopause Society surveyed almost 600 women aged 44 to 73. 94% reported digestive symptoms. Acid reflux affected 49%, alongside bloating at 77%, constipation at 54% and stomach pain at 50%.

The number that stopped me: 82% said their digestive symptoms either began or got worse at perimenopause or menopause.

And yet only a third had ever received a formal diagnosis. Of the women who did seek professional help, 58% found the support they got inadequate. More than half said their symptoms had a significant or regular impact on their quality of life.

So if you have felt fobbed off about this, you are not imagining it, and you are very much not alone.

Why perimenopause brings on reflux

Several things happen at once, which is why it can feel like it arrives out of nowhere.

Oestrogen affects stomach acid and bicarbonate. Bicarbonate is your body’s own neutralising agent. When the balance between the two shifts, reflux symptoms increase.

Oestrogen helps protect the mucosal layer lining your stomach. As oestrogen falls, that protective layer can thin, leaving the tissue more vulnerable.

Digestion slows down. Lower oestrogen reduces muscle tone and peristalsis, the wave-like movement that carries food along. Stomach acid and enzyme production also decline with age. Both feed straight back into the fermentation and gas picture from the first section. This is the clearest illustration of why reflux does not equal high acid: the problem is often too little digestive capacity, not too much.

And higher oestrogen can cause it too. Lower oestrogen speeds gut transit, higher oestrogen slows it. Which is why plenty of women starting menopausal hormone therapy notice reflux appearing or worsening. That is not a reason to stop, but it is worth knowing so you can name it rather than panic about it. If it is a persistent problem, the dose and the route are both worth discussing with your prescriber.

You can see why this is rarely a one-cause problem.

Where GLP-1 medications fit

GLP-1 medications such as semaglutide and tirzepatide work partly by slowing gastric emptying. Food sits in the stomach for longer, which is exactly the mechanism we have just been describing. So reflux is a known and expected effect rather than a surprise.

A 2025 meta-analysis of placebo-controlled trials in Gastroenterology found GLP-1 medications roughly doubled the risk of reflux disease compared with placebo, and modestly increased the risk of gallstones. In absolute terms that worked out at about 4 extra cases of reflux per 1,000 people and 2 extra gallstone cases per 1,000. Notably, the same analysis found no increase in other gut or biliary problems.

So: real, expected, and for most people not dramatic. But if you are on a GLP-1 and reflux has appeared or worsened, it is not in your head, and it is worth raising rather than quietly enduring. Smaller meals, less fat in a single sitting, staying upright after eating and not eating close to bed all help more on a GLP-1 than they do otherwise, because the stomach is emptying more slowly to begin with. For more on my thoughts on GLP-1 medications, read here.

What about acid-suppressing medication?

Proton pump inhibitors, the medications ending in "prazole", work by shutting down acid production. They can be genuinely valuable, and for some conditions they are exactly the right treatment. If you have been prescribed one, this is not a reason to stop.

Two things are worth understanding, though.

The first is that if your reflux is being driven by slow digestion and low acid rather than excess acid, suppressing acid further may relieve the burning without touching the cause. Symptoms return when you stop, so the prescription continues, and years pass.

The second is that stomach acid is not the enemy. You need it to break down protein and to absorb several nutrients properly. Long-term acid suppression is associated with lower absorption of vitamin B12, magnesium and iron. In perimenopause, when many women are already short on iron from heavy bleeding, that matters. It is one of the reasons red meat can become harder to digest too, which I have written about in the meat intolerance post.

Please do not stop a PPI abruptly. Acid production can rebound above where it started, symptoms come back worse, and people conclude they needed the medication after all. If you want to come off one, it is done gradually and with your GP.

What I would say is this: if you have been on acid suppression for years without anyone revisiting why, that is a conversation worth having. And in the meantime, there is a great deal that can be done nutritionally and herbally.

There are some wonderful herbal and nutritional medicines for reflux that work by supporting and soothing the digestive tract rather than switching it off, which means they do not carry the nutrient absorption trade-off. Demulcent herbs like slippery elm, marshmallow root and licorice coat and calm irritated tissue. Bitters taken before meals encourage your own digestive secretions rather than suppressing them. Deglycyrrhizinated licorice, zinc carnosine and glutamine all support the integrity of the gut lining. Which of these suits you depends entirely on what is driving your reflux, which is why this is worth working through with a practitioner rather than guessing at the health food shop.

What actually helps

  • Slow down and chew properly. Unglamorous, and the single highest-yield change most women make. Digestion starts in the mouth and works best when you are not eating at your laptop.
  • Eat your largest meal earlier and leave two to three hours before lying down.
  • Smaller portions, more often rather than one large evening meal sitting on a slow stomach.
  • Bitters before meals. Rocket, radicchio, lemon in water, apple cider vinegar. These prompt your own digestive secretions instead of suppressing them.
  • Support motility with fibre, hydration and movement. A short walk after dinner does more than it sounds like it should.
  • Notice your triggers, but do not build a life around them. Coffee, alcohol, chocolate, tomatoes, spice and fatty meals are the usual suspects. Reduce them while you address the cause, rather than avoiding them forever.
  • Manage the stress load. Digestion happens in a parasympathetic state. Three slow breaths before you eat is not a soft suggestion.
  • Consider mechanical contributors. I know when the thoracic region of my spine goes out of alignment, reflux is not far behind. Manual therapists can help with some of this. Hiatus hernia is also worth ruling out if symptoms are stubborn.
  • Work with your healthcare team. Your GP for diagnosis and to rule out anything that needs ruling out, and a naturopath for the holistic side.

When reflux needs your GP

Most reflux is uncomfortable rather than dangerous. But some symptoms need proper assessment, not a home remedy. Please see your doctor promptly if you have:

  • Difficulty or pain when swallowing, or a sensation of food sticking
  • Unintentional weight loss
  • Vomiting blood, or black, tarry stools
  • Persistent vomiting
  • Reflux that is new and persistent, particularly after 50
  • Symptoms that keep coming back despite treatment, or that have been going on for years
  • Anaemia found on a blood test

And if chest pain comes with breathlessness, sweating, nausea, or pain spreading to your arm, jaw or back, treat it as a possible heart problem and seek emergency care. Heart symptoms in women are frequently mistaken for indigestion, including by women themselves.

The bottom line

Reflux in your 40s is not something you have to accept as part of getting older. It is a signal that digestion is not working the way it used to, and digestion is very responsive to the right changes.

The question is not "how do I neutralise this acid?" It is "why has my digestion slowed down, and what does it need?"

If reflux has crept into your 40s along with everything else, the good news is that digestion responds quickly when you give it what it needs.

That is a lot of what PerimenoGO is: four weeks of eating and living in a way that suits a perimenopausal body, with the plan and the recipes done for you. Let’s PerimenoGO.

And if your reflux has been going on for years, or you are on long-term medication and want to understand what is actually driving it, that is a bigger conversation. My free Clarity Call is 20 minutes to work out what would help most. Book a Clarity Call here.

Frequently asked questions

Can perimenopause cause acid reflux?

Yes. Falling oestrogen reduces gut motility and the protective mucosal layer in the stomach, while stomach acid and enzyme production also decline with age. Food moves more slowly, ferments, and creates pressure that pushes stomach contents upward. In research presented to The Menopause Society in 2025, 49% of women surveyed reported acid reflux and 82% said their digestive symptoms began or worsened around perimenopause or menopause.

Is reflux always caused by too much stomach acid?

No, and this is the most useful thing to understand about it. Low stomach acid can produce identical symptoms, because slow digestion causes fermentation and gas, and that pressure pushes normal amounts of acid into the oesophagus. This is why some people get no lasting benefit from acid-suppressing treatment.

How do I know if my reflux is low acid or high acid?

There is no perfect home test, but some patterns are suggestive. Low stomach acid is more likely if you feel heavy and full for hours after eating, struggle particularly with red meat and protein, see undigested food in your stool, or have low iron, B12 or zinc. Persistent burning shortly after eating, especially with a history of infection or inflammation, points more toward excess acid. It is worth assessing properly rather than guessing.

Can HRT or MHT cause reflux?

It can. Higher oestrogen slows gut transit, so reflux appearing or worsening after starting menopausal hormone therapy is not unusual. It is not a reason to stop, but if it persists, the dose and the route are worth discussing with your prescriber.

Do Ozempic and other GLP-1 medications cause reflux?

They can. GLP-1 medications slow gastric emptying, so food sits in the stomach longer. A 2025 meta-analysis in Gastroenterology found GLP-1 medications roughly doubled the relative risk of reflux disease compared with placebo, equating to around 4 extra cases per 1,000 people, and modestly increased gallstone risk. Smaller meals, less fat at once, staying upright after eating and not eating close to bedtime all help.

Are long-term antacids or PPIs bad for you?

They have a real place, and nobody should stop a prescribed medication without medical advice. But stomach acid is needed to digest protein and absorb nutrients, and long-term acid suppression is associated with reduced absorption of vitamin B12, magnesium and iron, which matters in perimenopause when iron is often already low. If you have been on one for years without review, that is worth revisiting with your GP. Never stop abruptly, as acid production can rebound.

What natural remedies help reflux without affecting nutrient absorption?

Demulcent herbs such as slippery elm, marshmallow root and licorice soothe irritated tissue. Bitters before meals stimulate your own digestive secretions rather than suppressing them. Deglycyrrhizinated licorice, zinc carnosine and glutamine support the gut lining. Which is appropriate depends on what is driving your reflux, so it is worth working with a practitioner.

Tired of guessing what your changing body needs?

Start with a free Clarity Call, or go self-paced with PerimenoGO.

Sarah McLachlan, The Perimenopause Naturopath

Sarah McLachlan, The Perimenopause Naturopath (BHSc Nat, BSc Psyc). Degree-qualified naturopath, perimenopause specialist since 2017, and homeschooling mum of four in Adelaide. I help women 40+ understand what to eat, drink, and do so perimenopause isn't a sh!t show. More about Sarah

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